informatics, bioinformatics accelerator, genomics, genome annotation, genome analysis, sequence analysis, homology comparison, fpga, field programmable gate array, timelogic, decypher, blast, ncbi, genbank, algorithm, smith-waterman, framesearch, hmmer, hidden markov model, hmm, server farm, blast farm, compute cluster, proteomics, mass spec data analysis, pharmacogenomics, snp mapping, gene finding, sequence comparison, genedetective, repeat masker, repeatmasker, blast binary, megablast, mpi blast, wublast, wu blast, word size, bac annotation, est annotation, est mapping, synteny, blast machine, genematcher, blast performance, bovine genome, human genome, swissprot, pfam, agricultural genomics, profilesearch, domain classification, hmm-pfam, pfam hmm, pfam-hmm, hmm pfam, gribskov profile,